Syntax Error Yacc
Visit the following links: Site Howto | Site FAQ | Sitemap | Register Now If you have any problems with the registration process or your account login, please contact us. Restart the installation: cd install; make install Old Installation Questions When I test or run DOCK with the amber_score, I get a getpdb: can't open file lig.1.amber.pdb error: cd test/amber_score_1lgu ; Error from amberize_ligand; ... What is the status of DOCK on SGI platforms ? his comment is here
The GNU replacement for yacc is called bison. It's at the same level as libpcap. How to handle a senior developer diva who seems unaware that his skills are obsolete? When I compile DOCK with Intel compilers, I get a multiple definition of `main' error: ifort -O2 grid.o score.o score_grid.o grid point.o define.o io.o io_grid.o io_gridf.o mol_prep.o io_receptor.o io_mol2.o io_pdb.o io_ptr.o http://stackoverflow.com/questions/10733238/make-yacc-command-not-found-after-installing-bison
Error Yacc Not Found
The output of "which bison" command is "/usr/bin/bison". Known causes are an incorrectly defined AMBERHOME environment variable, a correctly defined AMBERHOME environment variable that points to a faulty AMBER installation, and a correctly defined AMBERHOME environment variable that points Here is a quick start example: sh < ./dms.shar cd dms # Edit GNUmakefile per the README: change LIBDIR and BINDIR vi GNUmakefile make install Some reported problems are caused by Since bison is supposed to be compatible with yacc so the first thing I would try would be: alias yacc="bison" and try again.
up vote 3 down vote Run the following command on your terminal to install bison, yacc executables and configurations.yacc comes along with bison Also you need byacc for a full functional If it is found then edit dock6/install/config.h and add a YACC definition that is equal to bison, i.e YACC='bison -y'. Newer Than: Search this thread only Search this forum only Display results as threads Useful Searches Recent Posts More... Lex: Not Found Software Development Pages Home About Contact Saturday, April 12, 2008 make: yacc: Command not found on CentOS When I was installing monit on CentOS 5, I got that error message when
How to create drop down boxes in Ruby on Rails Migration file : 001_create_people.rb class CreatePeople < ActiveRecord::Migration def self.up create_table :people do |t| t... Look for a lexical analyzer generator on your machine. All classical Unices have yacc. http://www.linuxquestions.org/questions/linux-software-2/yacc-command-not-found-408747/ Note that UCSF Chimera's Tool Write DMS (Chimera versions 1.3 and later) is a replacement for program dms; try it !
here is the last few lines of the make output: /usr/local/mysql/lib/mysqlclient.a(my.compress.o) In function 'my-uncompress' undefined reference to uncompress then there was an undefined ref to compress collect2:Id returned 1 exit status Lex Command Not Found How can this error be solved? General Questions What is the current release of DOCK? Reply With Quote 07-15-2001,07:07 PM #6 mrJoshua View Profile View Forum Posts Registered User Join Date Jul 2001 Posts 7 okay bison worked then I installed flex.
Yacc Error Recovery
I ran into a problem at make/install LIBPCAP (page 3). How to check the version of ImageMagick convert -version This can also be checked if ImageMagick is already installed. Error Yacc Not Found The error is buried inside one of the amberize_bla.out files. Yacc Error Handling This can cause antechamber to fail.
GNU bison) is a dependency. this content The time now is 04:48 AM. Do you want to help us debug the posting issues ? < is the place to report it, thanks ! Sorry if that's a dumb question. Yacc Command Not Found
magnese closed this Feb 8, 2016 Sign up for free to join this conversation on GitHub. Now during the apach_1.3.20 make I got an undefined ref to uncompress. Restart the installation: cd install; make install In DOCK 6.0 try our dock6/src/dock/nab/lex.mm_options.c: Change directory to dock6/src/dock/nab and execute make clean. weblink make: yacc: Command not found on CentOS How to install Mongrel on CentOS 5 Installation notes rubygems 1.1.0 on CentOS 5 Installing Nginx on CentOS 5 Installing MySQL server on Centos
Browse other questions tagged bison yacc or ask your own question. Yacc Command Not Found Centos When running make file gets this error [email protected]:~/lankacom/kannel/gateway-1.4.4 $ make Makefile:337: .depend: No such file or directory yacc -d -p ws_yy_ wmlscript/wsgram.y && mv y.tab.c wmlscript/wsgram.c /bin/bash: yacc: command not found They hope these examples will help you to get a better understanding of the Linux system and that you feel encouraged to try out things on your own.
I included the last 4 lines of output from make: lex -t scanner.l > $$.scanner.c; mv $$.scanner.c scanner.c yacc -d grammar.y make: yacc: Command not found make: *** [grammar.c] Error 127
Why is the spacesuit design so strange in Sunshine? User contributions on this site are licensed under the Creative Commons Attribution Share Alike 4.0 International License. Restart the installation: cd install; make install Install a parser generator if one is not found. Flex: Command Not Found Right now bison is installed in the snorttemp/bison-2.3 directory (see article).
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But this command not found error is caused by a missing parser generator. (It may be that some users are not installing enough of their Linux.) Here are some suggestions: Verify Versions 6 of DOCK officially support Mac OS X platforms. Adv Reply Quick Navigation Programming Talk Top Site Areas Settings Private Messages Subscriptions Who's Online Search Forums Forums Home Forums The Ubuntu Forum Community Ubuntu Official Flavours Support New to You might need to install the bison package.
One can translate the DOS line terminators to UNIX line terminators using command dos2unix in Cygwin's cygutils package or using a web service. How to detect showListButton/hideListButton being clicked on collapsible PageBlockSection? template. All classical Unices have lex.
Thus, one of the steps of the DOCK amber preparation scripts is failing. The requirements section at kannel.org mentions GNU Bison. –Chintan Oct 27 '14 at 4:26 thank a lot....it is working now..... –Thushantha .Srimal Oct 27 '14 at 4:51 add a Look in your update/install program. Changing the transparency of terminal in Mac OS Le...
flex: The Fast Lexical Analyzer is free software. Join our community today! Translating "machines" and "people" At first I was afraid I'd be petrified UPDATE heap table -> Deadlocks on RID Is the NHS wrong about passwords? any help is greatly appreciated.
I have been updating the libraries bit by bit using this forum to resolve each error in make... It is very likely that the AMBERHOME environment variable is causing erroneous behavior in the DOCK antechamber. Not the answer you're looking for? What are the prerequisites for installing on Mac OS X ?